#! /usr/bin/python #this is a script to extract given named nodes from a dot file, with #the associated edges. An edge is kept iff for edge x -> y # x and y are both nodes specified to be kept. #known issues: if a line contains '->' and is not an edge line #problems will occur. If node labels do not begin with #Node this also will not work. Since this is designed to work #on DSA dot output and not general dot files this is ok. #If you want to use this on other files rename the node labels #to Node[.*] with a script or something. This also relies on #the length of a node name being 13 characters (as it is in all #DSA dot output files) #Note that the name of the node can be any substring of the actual #name in the dot file. Thus if you say specify COLLAPSED #as a parameter this script will pull out all COLLAPSED #nodes in the file #Specifying escape characters in the name like \n also will not work, #as Python #will make it \\n, I'm not really sure how to fix this #currently the script prints the names it is searching for #to STDOUT, so you can check to see if they are what you intend import re import string import sys if len(sys.argv) < 3: print 'usage is ./DSAextract <dot_file_to_modify> \ <output_file> [list of nodes to extract]' #open the input file input = open(sys.argv[1], 'r') #construct a set of node names node_name_set = set() for name in sys.argv[3:]: node_name_set |= set([name]) #construct a list of compiled regular expressions from the #node_name_set regexp_list = [] for name in node_name_set: regexp_list.append(re.compile(name)) #used to see what kind of line we are on nodeexp = re.compile('Node') #used to check to see if the current line is an edge line arrowexp = re.compile('->') node_set = set() #read the file one line at a time buffer = input.readline() while buffer != '': #filter out the unnecessary checks on all the edge lines if not arrowexp.search(buffer): #check to see if this is a node we are looking for for regexp in regexp_list: #if this name is for the current node, add the dot variable name #for the node (it will be Node(hex number)) to our set of nodes if regexp.search(buffer): node_set |= set([re.split('\s+',buffer,2)[1]]) break buffer = input.readline() #test code #print '\n' print node_name_set #print node_set #open the output file output = open(sys.argv[2], 'w') #start the second pass over the file input = open(sys.argv[1], 'r') buffer = input.readline() while buffer != '': #there are three types of lines we are looking for #1) node lines, 2) edge lines 3) support lines (like page size, etc) #is this an edge line? #note that this is no completely robust, if a none edge line #for some reason contains -> it will be missidentified #hand edit the file if this happens if arrowexp.search(buffer): #check to make sure that both nodes are in the node list #if they are print this to output nodes = arrowexp.split(buffer) nodes[0] = string.strip(nodes[0]) nodes[1] = string.strip(nodes[1]) if nodes[0][:13] in node_set and \ nodes[1][:13] in node_set: output.write(buffer) elif nodeexp.search(buffer): #this is a node line node = re.split('\s+', buffer,2)[1] if node in node_set: output.write(buffer) else: #this is a support line output.write(buffer) buffer = input.readline()