// This file is part of Eigen, a lightweight C++ template library // for linear algebra. // // Copyright (C) 2011 Gael Guennebaud <gael.guennebaud@inria.fr> // Copyright (C) 2012 Desire NUENTSA WAKAM <desire.nuentsa_wakam@inria.fr> // // This Source Code Form is subject to the terms of the Mozilla // Public License v. 2.0. If a copy of the MPL was not distributed // with this file, You can obtain one at http://mozilla.org/MPL/2.0/. #ifndef EIGEN_SPARSE_MARKET_IO_H #define EIGEN_SPARSE_MARKET_IO_H #include <iostream> namespace Eigen { namespace internal { template <typename Scalar> inline bool GetMarketLine (std::stringstream& line, int& M, int& N, int& i, int& j, Scalar& value) { line >> i >> j >> value; i--; j--; if(i>=0 && j>=0 && i<M && j<N) { return true; } else return false; } template <typename Scalar> inline bool GetMarketLine (std::stringstream& line, int& M, int& N, int& i, int& j, std::complex<Scalar>& value) { Scalar valR, valI; line >> i >> j >> valR >> valI; i--; j--; if(i>=0 && j>=0 && i<M && j<N) { value = std::complex<Scalar>(valR, valI); return true; } else return false; } template <typename RealScalar> inline void GetVectorElt (const std::string& line, RealScalar& val) { std::istringstream newline(line); newline >> val; } template <typename RealScalar> inline void GetVectorElt (const std::string& line, std::complex<RealScalar>& val) { RealScalar valR, valI; std::istringstream newline(line); newline >> valR >> valI; val = std::complex<RealScalar>(valR, valI); } template<typename Scalar> inline void putMarketHeader(std::string& header,int sym) { header= "%%MatrixMarket matrix coordinate "; if(internal::is_same<Scalar, std::complex<float> >::value || internal::is_same<Scalar, std::complex<double> >::value) { header += " complex"; if(sym == Symmetric) header += " symmetric"; else if (sym == SelfAdjoint) header += " Hermitian"; else header += " general"; } else { header += " real"; if(sym == Symmetric) header += " symmetric"; else header += " general"; } } template<typename Scalar> inline void PutMatrixElt(Scalar value, int row, int col, std::ofstream& out) { out << row << " "<< col << " " << value << "\n"; } template<typename Scalar> inline void PutMatrixElt(std::complex<Scalar> value, int row, int col, std::ofstream& out) { out << row << " " << col << " " << value.real() << " " << value.imag() << "\n"; } template<typename Scalar> inline void putVectorElt(Scalar value, std::ofstream& out) { out << value << "\n"; } template<typename Scalar> inline void putVectorElt(std::complex<Scalar> value, std::ofstream& out) { out << value.real << " " << value.imag()<< "\n"; } } // end namepsace internal inline bool getMarketHeader(const std::string& filename, int& sym, bool& iscomplex, bool& isvector) { sym = 0; isvector = false; std::ifstream in(filename.c_str(),std::ios::in); if(!in) return false; std::string line; // The matrix header is always the first line in the file std::getline(in, line); eigen_assert(in.good()); std::stringstream fmtline(line); std::string substr[5]; fmtline>> substr[0] >> substr[1] >> substr[2] >> substr[3] >> substr[4]; if(substr[2].compare("array") == 0) isvector = true; if(substr[3].compare("complex") == 0) iscomplex = true; if(substr[4].compare("symmetric") == 0) sym = Symmetric; else if (substr[4].compare("Hermitian") == 0) sym = SelfAdjoint; return true; } template<typename SparseMatrixType> bool loadMarket(SparseMatrixType& mat, const std::string& filename) { typedef typename SparseMatrixType::Scalar Scalar; std::ifstream input(filename.c_str(),std::ios::in); if(!input) return false; const int maxBuffersize = 2048; char buffer[maxBuffersize]; bool readsizes = false; typedef Triplet<Scalar,int> T; std::vector<T> elements; int M(-1), N(-1), NNZ(-1); int count = 0; while(input.getline(buffer, maxBuffersize)) { // skip comments //NOTE An appropriate test should be done on the header to get the symmetry if(buffer[0]=='%') continue; std::stringstream line(buffer); if(!readsizes) { line >> M >> N >> NNZ; if(M > 0 && N > 0 && NNZ > 0) { readsizes = true; std::cout << "sizes: " << M << "," << N << "," << NNZ << "\n"; mat.resize(M,N); mat.reserve(NNZ); } } else { int i(-1), j(-1); Scalar value; if( internal::GetMarketLine(line, M, N, i, j, value) ) { ++ count; elements.push_back(T(i,j,value)); } else std::cerr << "Invalid read: " << i << "," << j << "\n"; } } mat.setFromTriplets(elements.begin(), elements.end()); if(count!=NNZ) std::cerr << count << "!=" << NNZ << "\n"; input.close(); return true; } template<typename VectorType> bool loadMarketVector(VectorType& vec, const std::string& filename) { typedef typename VectorType::Scalar Scalar; std::ifstream in(filename.c_str(), std::ios::in); if(!in) return false; std::string line; int n(0), col(0); do { // Skip comments std::getline(in, line); eigen_assert(in.good()); } while (line[0] == '%'); std::istringstream newline(line); newline >> n >> col; eigen_assert(n>0 && col>0); vec.resize(n); int i = 0; Scalar value; while ( std::getline(in, line) && (i < n) ){ internal::GetVectorElt(line, value); vec(i++) = value; } in.close(); if (i!=n){ std::cerr<< "Unable to read all elements from file " << filename << "\n"; return false; } return true; } template<typename SparseMatrixType> bool saveMarket(const SparseMatrixType& mat, const std::string& filename, int sym = 0) { typedef typename SparseMatrixType::Scalar Scalar; std::ofstream out(filename.c_str(),std::ios::out); if(!out) return false; out.flags(std::ios_base::scientific); out.precision(64); std::string header; internal::putMarketHeader<Scalar>(header, sym); out << header << std::endl; out << mat.rows() << " " << mat.cols() << " " << mat.nonZeros() << "\n"; int count = 0; for(int j=0; j<mat.outerSize(); ++j) for(typename SparseMatrixType::InnerIterator it(mat,j); it; ++it) { ++ count; internal::PutMatrixElt(it.value(), it.row()+1, it.col()+1, out); // out << it.row()+1 << " " << it.col()+1 << " " << it.value() << "\n"; } out.close(); return true; } template<typename VectorType> bool saveMarketVector (const VectorType& vec, const std::string& filename) { typedef typename VectorType::Scalar Scalar; std::ofstream out(filename.c_str(),std::ios::out); if(!out) return false; out.flags(std::ios_base::scientific); out.precision(64); if(internal::is_same<Scalar, std::complex<float> >::value || internal::is_same<Scalar, std::complex<double> >::value) out << "%%MatrixMarket matrix array complex general\n"; else out << "%%MatrixMarket matrix array real general\n"; out << vec.size() << " "<< 1 << "\n"; for (int i=0; i < vec.size(); i++){ internal::putVectorElt(vec(i), out); } out.close(); return true; } } // end namespace Eigen #endif // EIGEN_SPARSE_MARKET_IO_H